PUBLICATIONS
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2007
- Militon C., S. Rimour, M. Missaoui, C. Biderre, V. Barra, D. Hill, A. Moné, G. Gagne, H. Meier, E. Peyretaillade, and P. Peyret. 2007. PhylArray: phylogenetic probe design algorithm for microarray Bioinformatics, 23(19):2550-2557.
2006
- Kumar Y, R. Westram, P. Kipfer, H. Meier, and W. Ludwig. 2006. Evaluation of sequence alignments and oligonucleoatide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package. BMC Bioinformatics, 7:240.
- Marc Strous, Eric Pelletier, Sophie Mangenot, Thomas Rattei, Angelika Lehner, Michael W. Taylor, Matthias Horn, Holger Daims, Delphine Bartol-Mavel, Patrick Wincker, Valérie Barbe, Nuria Fonknechten, David Vallenet, Béatrice Segurens, Chantal Schenowitz-Truong, Claudine Médigue, Astrid Collingro, Berend Snel, Bas E. Dutilh, Huub J. M. Op den Camp, Chris van der Drift, Irina Cirpus, Katinka T. van de Pas-Schoonen, Harry R. Harhangi, Laura van Niftrik, Markus Schmid, Jan Keltjens, Jack van de Vossenberg, Boran Kartal, Harald Meier, Dmitrij Frishman, Martijn A. Huynen, Hans-Werner Mewes, Jean Weissenbach, Mike S.M. Jetten, Michael Wagner, Denis Le Paslier. 2006. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature, 440: 790
2005
- Schmid M. W., A. Lehner, R. Stephan, K.-H. Schleifer, and H. Meier. 2005. Development and application of oligonucleotide probes for in situ detection of thermotolerant Campylobacter in chicken faecal and liver samples. Int. J. Food Microbiol., 105(2):245-255.
- Loy, A., W. Beisker, and Harald Meier. 2005. Diversity of Bacteria Growing in Natural Mineral Water after Bottling. Appl. Environ. Microbiol., 71(7):3624-3632.
- Stamatakis, A. P., T. Ludwig and H. Meier. 2005. RAxML-II: A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees. Concurrency and Computation: Practice and Experience, 17(14):1705-1723.
- Stamatakis A., M. Ott, T. Ludwig, and H. Meier. 2005. DRAxML@home: A Distributed Program for Computation of Large Phylogenetic Trees. Future Generation Computer Systems, 21(5):725-730.
- Kumar Y, R. Westram, S. Behrens, B. Fuchs, F. O. Glöckner, R. Amann, H. Meier, W. Ludwig. 2005. Graphical representation of ribosomal RNA probe accessibility data using ARB software package. BMC Bioinformatics, 6:61.
- Stamatakis A., T. Ludwig, and H. Meier. 2005. RAxML-III: A Fast Program for Maximum Likelihood-based Inference of Large Phylogenetic Trees. Bioinformatics, 21(4): 456-463.
2004
- Stamatakis A., T. Ludwig, and H. Meier. 2004. Parallel Inference of a 10.000-taxon Phylogeny with Maximum Likelihood. Lecture Notes in Computer Science, 3149:997-1004.
- Stamatakis A., T. Ludwig, and H. Meier. 2004. A Fast Program for Phylogenetic Tree Inference with Maximum Likelihood, pp 273-284 In: Siegfried Wagner, Werner Hanke, Arndt Bode, Franz Durst (eds.), High Performance Computing in Science and Engineering, Munich 2004, Springer Verlag, Berlin.
- Stamatakis A., T. Ludwig, and H. Meier. 2004. Parallel Inference of a 10.000-taxon Phylogeny with Maximum Likelihood. Proceedings of Euro-Par 2004, Pisa, Italy, September 2004.
- Stamatakis A. P., T. Ludwig and H. Meier. 2004. New Fast and Accurate Heuristics for Inference of Large Phylogenetic Trees. Procceedings of 18th ACM/IEEE International Parallel and Distributed Processing Symposium (IPDPS2004), High Performance Computational Biology Workshop, Santa Fe, New Mexico, April 2004.
- Stamatakis A. P., T. Ludwig, and H. Meier. 2004. A Fast Program for Maximum Likelihood-based Inferrence of Large Phylogenetic Trees. Proceedings of 19th ACM Symposium on Applied Computing (SAC 2004), Nicosia, Cyprus, March 2004, 197-201.
- Meier, H., A. Krause, M. Kräutner and A. Bode. 2004. Development and implementation of a parallel algorithm for the fast design of oligonucleotide probe sets for diagnostic DNA microarrays. Concurrency and Computation: Practice and Experience, 16:873-893.
- Stamatakis, A. P., T. Ludwig and H. Meier. 2004. The AxML Program Family for Maximum Likelihood-based Phylogenetic Tree Inferrence. Concurrency and Computation: Practice and Experience, 16:975-988.
- Ludwig, W., O. Strunk, Ralf Westram, Lothar Richter, Harald Meier, Yadhukumar, Arno Buchner, Tina Lai, Susanne Steppi, Gangolf Jobb, Wolfram Förster, Igor Brettske, Stefan Gerber, Anton W. Ginhart, Oliver Gross, Silke Grumann, Stefan Hermann, Ralf Jost, Andreas König, Thomas Liss, Ralph Lüßmann, Michael May, Björn Nonhoff, Boris Reichel, Robert Strehlow, Alexandros P. Stamatakis, Norbert Stuckmann, Alex-ander Vilbig, Michael Lenke, Thomas Ludwig, Arndt Bode and Karl-Heinz Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Research, 32 (4):1363-1371
2003
- Meier H. und A. Bode. 2003. Dem Geheimnis des Lebens auf der Spur. In Zukunft im Brennpunkt. Hrsg.: Arbeitsgemeinschaft der Bayerischen Forschungsverbünde, Band 2, pp. 33-38.
- Stamatakis, A. P., M. Lindermeier, M. Ott, T. Ludwig, and H. Meier. DAxML: A Program for Distributed Computation of Phylogenetic Trees Based on Load Managed CORBA. In Proceedings of 7th International Conference on Parallel Computing Technologies (PaCT2003), Volume 2763 of Lecture Notes in Computer Science, 538-548, Springer Verlag, September 2003.
- Stamatakis, A. P., T. Ludwig, and H. Meier. 2003. Neues vom Projekt ParBaum - Parallele und verteilte Systeme und Algorithmen zur Berechnung großer phylogenetischer Bäume mit Maximum-Likelihood (Parallel and Distributed Systems and Algorithms for the Inference of big Phylogenetic Trees with Maximum Likelihood). In KONWIHR Quartl, 34.Ausgabe 1/2003 p.4-7, May 2003.
- Krause, A., Kräutner, M., and H. Meier. 2003. Accurate Method for Fast Design of Diagnostic Oligonucleotide Probe Sets for DNA Microarrays. In: Proceedings of the 17th International Parallel & Distributed Processing Symposium (IPDPS2003), High Performance Computational Biology workshop, IEEE Computer Society, Nice, France.
2002
- Loy, A., Lehner, A., Lee, N., Adamczyk, J., Meier, H., Ernst, J., Schleifer, K.-H., and Wagner, M. 2002. An oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl. Environ. Microbiol., 68:5064-5081.
- Stamatakis, A.P., T. Ludwig and H. Meier. Adapting PAxML to the Hitachi SR8000-F1 Supercomputer, pp 453-466. In: Siegfried Wagner, Werner Hanke, Arndt Bode, Franz Durst (eds.), High Performance Computing in Science and Engineering, Munich 2002, Springer Verlag, Berlin.
- Stamatakis, A.P., T. Ludwig, H. Meier and M.J. Wolf. Accelerating Parallel Maximum Likelihood-based Phylogenetic Tree Calculations using Subtree Equality Vectors. In Proceedings of Supercomputing Conference (SC2002), Baltimore, Maryland.
- Stamatakis, A.P., T. Ludwig, H. Meier and M.J. Wolf. AxML: A Fast Program for Sequential and Parallel Phylogenetic Tree Computations Based on the Maximum Likelihood Method, pp 21-28. In Proceedings of 1. IEEE Bioinformatics Conference (CSB2002), Stanford University, Palo Alto, California, August 2002
2000
- Lebuhn, M., W. Achouak, M. Schloter, O. Berge, H. Meier, A. Hartmann and Th. Heulin. 2000.
Taxonomic characterization of Ochrobactrum sp. isolates from soil samples
and wheat roots, and description of Ochrobactrum tritici sp. nov. and Ochrobactrum grignonense sp. nov..
Int J Syst Evol Microbiol..50(6):2207-2223.
- Behr T, Koob C, Schedl M, Mehlen A, Meier H, Knopp D, Frahm E, Obst U, Schleifer K, Niessner R, Ludwig W. 2000.
A nested array of rRNA targeted probes for the detection and identification of enterococci
by reverse hybridization. Syst Appl Microbiol. 23(4):563-572.
1999
1998
- Harald Meier. 1998. Detection and identification of indicator bacteria using rRNA targeted probes. In: Proceedings of the OECD Workshop on MOLECULAR TECHNOLOGIES FOR SAFE DRINKING WATER, July 1998, Interlaken, Switzerland.
- Schleifer, K. H. and H. Meier. 1998. Mikrobiologische Qualitätskontrolle von Trinkwasser, pp 101-111.
In: Bayerische Akademie der Wissenschaften (Herausgeber): Wie gefährdet ist unser Trinkwasser?
Grundwasser-Nutzung und Belastung. Rundgespräche der Kommission für Ökologie, Band 14.
Verlag Dr. Pfeil, München, Deutschland.
- Meier, H., C. Koob, W. Ludwig, R. Amann, E. Frahm, and K. H. Schleifer. 1998. Nachweis von Enterokokken
mit fluoreszierenden, rRNS-gerichteten Sonden zur hygienischen Trinkwasserkontrolle, S. 175-200.
In: Bayerisches Landesamt für Wasserwirtschaft-Institut für Wasserforschung (Herausgeber):
Neueste Entwicklungen in der in situ-Charakterisierung mikrobieller Biozönosen in Abwasser,
Oberflächengewässern, Grund- und Trinkwasser. Münchner Beiträge zur Abwasser-, Fischerei-, und Flußbiologie, Band 52.
Oldenbourg Verlag, München.
- Frahm, E., I. Heiber, S. Hoffmann, C. Koob, H. Meier, W. Ludwig, R. Amann, K. H. Schleifer, and U. Obst. 1998.
Application of 23S rDNA-targeted Oligonucleotide Probes Specific for Enterococci to
Water Hygiene Control. System Appl. Microbiol. 21:450-453.
- Beisker, W. and H. Meier. 1998.
Flow cytometric determination of bacterial populations in bottled natural mineral waters. pp 290-297.
In: Proceedings of Optical Investigations of Cells In Vitro and In Vivo (eds.: D.L. Farkas et al.), SPIE, Vol. 3260, Bellingham, USA.
1997
- Harald Meier.
Nachweis von Fäkalstreptokokken mit rRNS-gerichteten
Oligonukleotidsonden zur Anwendung in der hygienischen Trinkwasserkontrolle.
Dissertation, Technische Universität München, April 1997.
- Lemmer H., A. Zaglauer, A. Neef, H. Meier and R. Amann. 1997.
Denitrification in a methanol-fed fixed bed reactor.
Part 2: Composition and ecology of the bacterial community in the biofilms.
Wat. Res. 27:458-469.
- Meier, H., C. Koob, W. Ludwig, R. Amann, E. Frahm, U. Obst, S. Hoffmann and K. H. Schleifer. 1997.
Detection of Enterococci on group and species level with rRNA targeted DNA
probes for hygienical drinking water control.
Wat. Sc. Technol. 35 (11-12):437-444.
- Jess, J., N. J. High, H. A. S. Epton, D. C. Sigee, J. G. ONeill, H. Meier and P. Handley. 1997.
Comparison of the API 20NE biochemical identification system and partial
16S rRNA gene sequencing for the characterization of culturable heterotrophs from a water distribution system biofilm
, pp. 147-156. In: J. Wimpenny, P. Handley, P. Gilbert, H. Lappin-Scott and M. Jones (eds.), Biofilms, Community Interactions
and Control. BioLine, Wiltshire, UK.
1996
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